{"id":169,"date":"2021-03-20T20:32:35","date_gmt":"2021-03-21T01:32:35","guid":{"rendered":"https:\/\/college.agrilife.org\/zenglab\/?page_id=169"},"modified":"2021-03-20T20:32:35","modified_gmt":"2021-03-21T01:32:35","slug":"publications","status":"publish","type":"page","link":"https:\/\/college.agrilife.org\/zenglab\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n
  1. Cortes, M., Lin, Y., Zeng, L<\/strong>.*, and Bal\u00e1zsi, G., From bench to keyboard and back again: a brief history of lambda phage modeling, accepted, Annual Review of Biophysics<\/em> (2021). * co-corresponding author<\/li>
  2. Costa, T.R.D., Harb, L., Khara, P., Zeng, L.<\/strong>, Hu, B., and Christie, P.J. Type IV secretion systems: Advances in structure, function, and activation<\/a>, Molecular Microbiology<\/em> (2020)<\/li>
  3. Harb, L., Chamakura, K., Khara, P., Christie, P.J., Young, R., and Zeng, L.<\/strong>, ssRNA Phage Penetration Triggers Detachment of the F-pilus<\/a>, PNAS<\/em> (2020) News coverage<\/a><\/li>
  4. Trinh, J.T. and Zeng, L.<\/strong>, \u201cPhage-Phage Interactions\u201d in the book \u201cBiocommunication of Phages<\/a>\u201d, Springer 2020.<\/li>
  5. Trinh, J.T., Shao, Q., Guan J., and Zeng, L.<\/strong>, Emerging Heterogeneous Compartments by Viruses in Single Bacterial Cells<\/a>, Nature Communications<\/em> 11, 3813 (2020)<\/li>
  6. Zhang, K., Young, R., and Zeng, L.<\/strong>, Bacteriophage P1 does not show spatial preference when infecting Escherichia coli<\/em><\/a>, Virology<\/em> 542, 1-7(2020)<\/li>
  7. Trinh, J.T. and Zeng, L.<\/strong>, Structure Regulates Phage Lysis-Lysogeny Decisions<\/a>, Trends in Microbiology <\/em>27(1), 3-4(2019)<\/li>
  8. Guan, J., Ibarra, D., and Zeng, L.<\/strong>, The Role of Side Tail Fibers during the Infection Cycle of Phage Lambda<\/a>, Virology <\/em>527, 57-63(2019)<\/li>
  9. Gordeeva, J., Morozova, N., Sierro, N., Isaev, A., Tsvetkova, K., Matlashov, M., Ivanov, N., Zeng, L.<\/strong>, and Severinov, K., BREX System of Escherichia coli <\/em>Distinguishes Self from Non-Self by Methylation of a Specific DNA Site<\/a>, Nucleic Acids Research <\/em>47(1), 253-265 (2019)<\/li>
  10. Shao, Q., Trinh, J.T., and Zeng, L.<\/strong>, High-resolution studies of lysis-lysogeny decision making in bacteriophage lambda<\/a>,  Journal of Biological Chemistry <\/em>294(10), 3343-3349(2019)<\/li>
  11. Shao, Q., Cortes, M., Trinh, J.T., Guan, J., Bal\u00e1zsi, G., and Zeng, L.<\/strong>, Coupling of DNA Replication and Negative Feedback Controls Gene Expression for Cell-fate Decisions<\/a>, iScience <\/em>6, 1-12 (2018)<\/li>
  12. Wang, X., Park, S., Zeng, L.<\/strong>, Jain, A., and Ha, T., Towards Single-cell Single-molecule Pull-down<\/a>, Biophysical Journal <\/em> 115(2), 283-288 (2018)<\/li>
  13. Trinh, J.T., Alkahtani, M.H., Rampersaud, I., Rampersaud, A., Scully, M., Young, R.F., Hemmer, P., and Zeng, L.<\/strong>, Fluorescent Nanodiamond-bacteriophage Conjugates Maintain Host Specificity<\/a>, Biotechnology and Bioengineering <\/em>115, 1427-1436 (2018)<\/li>
  14. Cortes, M., Trinh, J.T., Zeng, L.<\/strong>, and Bal\u00e1zsi, G., Late-arriving Signals Contribute Less to Cell Fate Decisions<\/a>, Biophysical Journal<\/em> 113(9), 2110-2120 (2017)<\/li>
  15. Trinh, J.T. and Zeng, L.<\/strong>, Virus Interactions: Competition or Cooperation?<\/a>, Future Microbiology <\/em>12(7), 561-564  (2017)<\/li>
  16. Guan, J., Shi, X., Burgos, R., and Zeng, L.<\/strong>, Visualization of Phage DNA Degradation by a Type I CRISPR-Cas System at the Single-cell Level<\/a>, Quantitative Biology <\/em>5(1), 67-75 (2017)<\/li>
  17. Trinh, J.T., Sz\u00e9kely, T., Shao, Q., Bal\u00e1zsi, G., and Zeng, L.<\/strong>, Cell Fate Decisions Emerge as Phages Cooperate or Compete inside Their Host<\/a>, Nature Communications<\/em> 8, 14341 (2017). Natural History magazine, Samplings section. Texas A&M AgriLife Today<\/a>.<\/li>
  18. Shao, Q., Trinh, J.T., McIntosh, C.S., Christenson, B., Bal\u00e1zsi, G., and Zeng, L.<\/strong>, Lysis-lysogeny Coexistence: Prophage Integration during Lytic Development<\/a>, Microbiologyopen<\/em> (2016)<\/li>
  19. Fan, X., Duan, X., Huang Q., Zhou, M., Wang, H., Zeng, L.<\/strong>, Young, R., and Xie, J., The Global Reciprocal Reprogramming between Mycobacteriophage SWU1 and Mycobacterium Reveals the Molecular Strategy of Subversion and Promotion of Phage Infection<\/a>, Frontiers in Microbiology <\/em>7, article 41 (2016)<\/li>
  20. Fan, X., Yan, J., Xie, L., Zeng, L.<\/strong>, Young, R., and Xie, J., Genomic and Proteomic Analyses of Mycobacteriophage SWU1 Isolated from China Soil<\/a>, Gene<\/em> 561, 45-53 (2015)<\/li>
  21. Shao, Q., Hawkins, A., and Zeng, L.<\/strong>, Phage DNA Dynamics in Cells with Different Fates<\/a>, Biophysical Journal<\/em> 108, 2048-2060 (2015)<\/li>
  22. Zeng, L.<\/strong> and Golding, I., Following Cell-fate in E. coli<\/em> After Infection by Phage Lambda<\/a>, Journal of Visualized Experiments<\/em> (56):e3363. (2011)<\/li>
  23. Rothenberg, E., Sepulveda, L.A., Skinner, S.O., Zeng, L.<\/strong>, Selvin, P.R. and Golding, I., Single-virus Tracking Reveals a Spatial Receptor-Dependent Search Mechanism<\/a>, Biophysical Journal<\/em> 100, 2875-2882 (2011)<\/li>
  24. Zeng, L.<\/strong>, Skinner, S.O., Sippy, J., Feiss, M. and Golding, I., Decision Making at a Subcellular Level Determines the Outcome of Bacteriophage Infection<\/a>, Cell<\/em> 141(4), 682-691 (2010) Nature Research Highlights<\/a><\/li>
  25. Zeng, L.<\/strong>, Balachandar, S., Najjar, F. and Fischer, P., Wake Response of a Finite-sized Particle in a Turbulent Channel Flow<\/a>,  International Journal of Multiphase Flows<\/em> 36, 406-422 (2010)<\/li>
  26. Zeng, L.<\/strong>, Najjar, F., Balachandar, S. and Fischer, P., Forces on a Finite-sized Particle Located Close to a Wall in a Linear Shear Flow<\/a>, Physics of Fluids<\/em> 21, 033302 (2009)<\/li>
  27. Zeng, L.<\/strong>, Balachandar, S., Fischer, P. and Najjar, F., Interactions of a Stationary Finite-sized Particle with Wall Turbulence<\/a>,  Journal of Fluid Mechanics<\/em> 594, 271-305 (2008)<\/li>
  28. Zeng, L.<\/strong>, Balachandar, S. and Fischer, P., Wall-induced Forces on a Rigid Sphere at Finite Reynolds Number<\/a>, Journal of Fluid Mechanics<\/em> 536, 1-25 (2005)<\/li><\/ol>\n","protected":false},"excerpt":{"rendered":"

    Cortes, M., Lin, Y., Zeng, L.*, and Bal\u00e1zsi, G., From bench to keyboard and back again: a brief history of lambda phage modeling, accepted, Annual Review of Biophysics (2021). * co-corresponding author Costa, T.R.D., Harb, L., Khara, P., Zeng, L., Hu, B., and Christie, P.J. Type IV secretion systems: Advances in structure, function, and activation, Molecular Microbiology (2020) Harb, L., Chamakura, K., […]<\/p>\n","protected":false},"author":538,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"_relevanssi_hide_post":"","_relevanssi_hide_content":"","_relevanssi_pin_for_all":"","_relevanssi_pin_keywords":"","_relevanssi_unpin_keywords":"","_relevanssi_related_keywords":"","_relevanssi_related_include_ids":"","_relevanssi_related_exclude_ids":"","_relevanssi_related_no_append":"","_relevanssi_related_not_related":"","_relevanssi_related_posts":"","_relevanssi_noindex_reason":"","inline_featured_image":false,"_uag_custom_page_level_css":"","_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":""},"class_list":["post-169","page","type-page","status-publish","hentry"],"acf":[],"yoast_head":"\nPublications - 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